Alexey Karimov
Guided Interactive Volume Editing in Medicine
Supervisor: Eduard Gröller
Duration: March 2012 — June 2016
[
Abstract]
Information
- Publication Type: PhD-Thesis
- Workgroup(s)/Project(s):
- Date: June 2016
- Date (Start): March 2012
- Date (End): June 2016
- TU Wien Library:
- 1st Reviewer: Stefan Bruckner
- 2nd Reviewer: Bernhard Preim
- Rigorosum: 28. June 2016
- First Supervisor: Eduard Gröller
Abstract
Various medical imaging techniques, such as Computed Tomography, Magnetic Resonance Imaging, Ultrasonic Imaging, are now gold standards in the diagnosis of different diseases. The diagnostic process can be greatly improved with the aid of automatic and interactive analysis tools, which, however, require certain prerequisites in order to operate. Such analysis tools can, for example, be used for pathology assessment, various standardized measurements, treatment and operation planning. One of the major requirements of such tools is the segmentation mask of an object-of-interest. However, the segmentation of medical data remains subject to errors and mistakes. Often, physicians have to manually inspect and correct the segmentation results, as (semi-)automatic techniques do not immediately satisfy the required quality. To this end, interactive segmentation editing is an integral part of medical image processing and visualization.In this thesis, we present three advanced segmentation-editing techniques. They are focused on simple interaction operations that allow the user to edit segmentation masks quickly and effectively. These operations are based on a topology-aware representation that captures structural features of the segmentation mask of the object-of-interest.
Firstly, in order to streamline the correction process, we classify segmentation defects according to underlying structural features and propose a correction procedure for each type of defect. This alleviates users from manually applying the proper editing operations, but the segmentation defects still have to be located by users.
Secondly, we extend the basic editing process by detecting regions that potentially contain defects. With subsequently suggested correction scenarios, users are hereby immediately able to correct a specific defect, instead of manually searching for defects beforehand. For each suggested correction scenario, we automatically determine the corresponding region of the respective defect in the segmentation mask and propose a suitable correction operation. In order to create the correction scenarios, we detect dissimilarities within the data values of the mask and then classify them according to the characteristics of a certain type of defect. Potential findings are presented with a glyph-based visualization that facilitates users to interactively explore the suggested correction scenarios on different levels-of-detail. As a consequence, our approach even offers users the possibility to fine-tune the chosen correction scenario instead of directly manipulating the segmentation mask, which is a time-consuming and cumbersome task.
Third and finally, we guide users through the multitude of suggested correction scenarios of the entire correction process. After statistically evaluating all suggested correction scenarios, we rank them according to their significance of dissimilarities, offering fine-grained editing capabilities at a user-specified level-of-detail. As we visually convey this ranking in a radial layout, users can easily spot and select the most (or the least) dissimilar correction scenario, which improves the segmentation mask mostly towards the desired result.
All techniques proposed within this thesis have been evaluated by collaborating radiologists. We assessed the usability, interaction aspects, the accuracy of the results and the expenditure of time of the entire correction process. The outcome of the assessment showed that our guided volume editing not only leads to acceptable segmentation results with only a few interaction steps, but also is applicable to various application scenarios.
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No further information available.BibTeX
@phdthesis{karimov-2016-GIVE,
title = "Guided Interactive Volume Editing in Medicine",
author = "Alexey Karimov",
year = "2016",
abstract = "Various medical imaging techniques, such as Computed
Tomography, Magnetic Resonance Imaging, Ultrasonic Imaging,
are now gold standards in the diagnosis of different
diseases. The diagnostic process can be greatly improved
with the aid of automatic and interactive analysis tools,
which, however, require certain prerequisites in order to
operate. Such analysis tools can, for example, be used for
pathology assessment, various standardized measurements,
treatment and operation planning. One of the major
requirements of such tools is the segmentation mask of an
object-of-interest. However, the segmentation of medical
data remains subject to errors and mistakes. Often,
physicians have to manually inspect and correct the
segmentation results, as (semi-)automatic techniques do not
immediately satisfy the required quality. To this end,
interactive segmentation editing is an integral part of
medical image processing and visualization. In this thesis,
we present three advanced segmentation-editing techniques.
They are focused on simple interaction operations that allow
the user to edit segmentation masks quickly and effectively.
These operations are based on a topology-aware
representation that captures structural features of the
segmentation mask of the object-of-interest. Firstly, in
order to streamline the correction process, we classify
segmentation defects according to underlying structural
features and propose a correction procedure for each type of
defect. This alleviates users from manually applying the
proper editing operations, but the segmentation defects
still have to be located by users. Secondly, we extend the
basic editing process by detecting regions that potentially
contain defects. With subsequently suggested correction
scenarios, users are hereby immediately able to correct a
specific defect, instead of manually searching for defects
beforehand. For each suggested correction scenario, we
automatically determine the corresponding region of the
respective defect in the segmentation mask and propose a
suitable correction operation. In order to create the
correction scenarios, we detect dissimilarities within the
data values of the mask and then classify them according to
the characteristics of a certain type of defect. Potential
findings are presented with a glyph-based visualization that
facilitates users to interactively explore the suggested
correction scenarios on different levels-of-detail. As a
consequence, our approach even offers users the possibility
to fine-tune the chosen correction scenario instead of
directly manipulating the segmentation mask, which is a
time-consuming and cumbersome task. Third and finally, we
guide users through the multitude of suggested correction
scenarios of the entire correction process. After
statistically evaluating all suggested correction scenarios,
we rank them according to their significance of
dissimilarities, offering fine-grained editing capabilities
at a user-specified level-of-detail. As we visually convey
this ranking in a radial layout, users can easily spot and
select the most (or the least) dissimilar correction
scenario, which improves the segmentation mask mostly
towards the desired result. All techniques proposed within
this thesis have been evaluated by collaborating
radiologists. We assessed the usability, interaction
aspects, the accuracy of the results and the expenditure of
time of the entire correction process. The outcome of the
assessment showed that our guided volume editing not only
leads to acceptable segmentation results with only a few
interaction steps, but also is applicable to various
application scenarios.",
month = jun,
address = "Favoritenstrasse 9-11/E193-02, A-1040 Vienna, Austria",
school = "Institute of Computer Graphics and Algorithms, Vienna
University of Technology ",
URL = "https://www.cg.tuwien.ac.at/research/publications/2016/karimov-2016-GIVE/",
}