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64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2009/kohlmann-2009-cp/kohlmann-2009-cp-image:thumb{{size}}.png" }, { "description": "", "filetitle": "paper", "main_file": true, "use_in_gallery": false, "access": "public", "name": "kohlmann-2009-cp-paper.pdf", "type": "application/pdf", "size": 5149796, "path": "Publication:kohlmann-2009-cp", "url": "https://www.cg.tuwien.ac.at/research/publications/2009/kohlmann-2009-cp/kohlmann-2009-cp-paper.pdf", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2009/kohlmann-2009-cp/kohlmann-2009-cp-paper:thumb{{size}}.png" }, { "description": "", "filetitle": "video", "main_file": false, "use_in_gallery": false, "access": "public", "preview_image_width": 800, "preview_image_height": 600, "name": "kohlmann-2009-cp-video.avi", "type": "video/x-msvideo", "size": 19379400, "path": "Publication:kohlmann-2009-cp", "preview_name": 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The project focuses on radiological needs but also on related disciplines like surgical applications. ", "abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. \tReliability, stability and usability of the developed methods should be examined through the integration to a medical workstation to allow a clinical evaluation.", "start_date": "2006-01-01", "end_date": "2009-12-31", "leader_id": 166, "logo": { "name": "logo.png", "path": "project:diagvis", "type": "image/png", "size": 96193, "orig_name": "logo.png", "thumb_url": "https://www.cg.tuwien.ac.at/research/projects/diagvis/logo:thumb{{size}}.png", "thumb_image_sizes": [ 120, 300 ] }, "funding_organisations": [ { "id": "agfa", "contract_number": null, "comment": null } ], "research_areas": [], "publications": [ "bruckner-2008-IVV", "haidacher-2008-vcbm", "Kohlmann-2007-EBV", "kohlmann-2007-livesync", "kohlmann-2008-lse", "kohlmann-2009-cp", "kohlmann-2009-lssl", "TR-186-2-06-04", "TR-186-2-07-11", "TR-186-2-08-01", "TR-186-2-08-04", "TR-186-2-08-10", "TR-186-2-08-14" ], "url": "https://www.cg.tuwien.ac.at/research/projects/diagvis", "__class": "Project" } ], "url": "https://www.cg.tuwien.ac.at/research/publications/2009/kohlmann-2009-cp/", "__class": "Publication" }, { "id": "kohlmann-2009-lssl", "type_id": "phdthesis", "tu_id": null, "repositum_id": null, "title": "LiveSync: Smart Linking of 2D and 3D Views in Medical Applications", "date": "2009", "abstract": "In this thesis two techniques for the smart linking of 2D and 3D views in\r\nmedical applications are presented. Although real-time interactive 3D volume visualization is available even for very large data sets, it is used quite rarely in the clinical practice. A major obstacle for a better integration in the clinical workflow is the time-consuming process to adjust the parameters to generate diagnostically relevant images. The clinician has to take care of the appropriate viewpoint, zooming, transfer function setup, clipping planes, and other parameters. Because of this, current applications primarily employ 2D views generated through standard\r\ntechniques such as multi-planar reformatting (MPR).\r\n\r\nThe LiveSync interaction metaphor is a new concept to synchronize 2D slice\r\nviews and 3D volumetric views of medical data sets. Through intuitive picking actions on the slice, the users define the anatomical structures they are interested in. The 3D volumetric view is updated automatically with the goal that the users are provided with diagnostically relevant images. To achieve this live synchronization\r\na minimal set of derived information, without the need for segmented data sets or data-specific precomputations, is used. The presented system provides the physician with synchronized views which help to gain deeper insight into the medical data with minimal user interaction.\r\n\r\nContextual picking is a novel method for the interactive identification of contextual interest points within volumetric data by picking on a direct volume rendered image. In clinical diagnostics the points of interest are often located in the center of anatomical structures. In order to derive the volumetric position, which\r\nallows a convenient examination of the intended structure, the system automatically extracts contextual meta information from the DICOM (Digital Imaging and Communications in Medicine) images and the setup of the medical workstation. Along a viewing ray for a volumetric picking, the ray profile is analyzed to detect structures which are similar to predefined templates from a knowledge base. It is demonstrated that the obtained position in 3D can be utilized to highlight a structure in 2D slice views, to interactively calculate approximate centerlines of tubular objects, or to place labels at contextually-defined 3D positions.", "authors_et_al": false, "substitute": null, "main_image": { "description": "", "filetitle": "image", "main_file": true, "use_in_gallery": false, "access": "public", "image_width": 2103, "image_height": 1649, "name": "kohlmann-2009-lssl-image.jpg", "type": "image/jpeg", "size": 328401, "path": "Publication:kohlmann-2009-lssl", "url": "https://www.cg.tuwien.ac.at/research/publications/2009/kohlmann-2009-lssl/kohlmann-2009-lssl-image.jpg", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2009/kohlmann-2009-lssl/kohlmann-2009-lssl-image:thumb{{size}}.png" }, "sync_repositum_override": null, "repositum_presentation_id": null, "authors": [ { "id": 605, "drupal_id": 78, "orcid_id": null, 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"publ_id": "zambal-2009-ami", "field_id": "co_supervisor", "ordernum": 1 }, { "publ_id": "Zaufel_2021", "field_id": "supervisor", "ordernum": 0 }, { "publ_id": "zauner-2013-svkinect", "field_id": "supervisor", "ordernum": 0 }, { "publ_id": "zechmeister2020", "field_id": "supervisor", "ordernum": 0 }, { "publ_id": "Zhu-2014-flowvis", "field_id": "supervisor", "ordernum": 0 } ], "url": "https://www.cg.tuwien.ac.at/research/publications/show.php?class=Author&id=166", "__class": "Author" } ], "number": "TR-186-2-08-14", "research_areas": [], "keywords": [], "weblinks": [], "files": [ { "description": null, "filetitle": "image", "main_file": false, "use_in_gallery": false, "access": "public", "image_width": 1098, "image_height": 756, "name": "TR-186-2-08-14-image.jpg", "type": "image/jpeg", "size": 86131, "path": "Publication:TR-186-2-08-14", "url": "https://www.cg.tuwien.ac.at/research/publications/2008/TR-186-2-08-14/TR-186-2-08-14-image.jpg", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2008/TR-186-2-08-14/TR-186-2-08-14-image:thumb{{size}}.png" }, { "description": null, "filetitle": "technical report", "main_file": true, "use_in_gallery": false, "access": "public", "name": "TR-186-2-08-14-technical report.pdf", "type": "application/pdf", "size": 3659579, "path": "Publication:TR-186-2-08-14", "url": "https://www.cg.tuwien.ac.at/research/publications/2008/TR-186-2-08-14/TR-186-2-08-14-technical report.pdf", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2008/TR-186-2-08-14/TR-186-2-08-14-technical report:thumb{{size}}.png" } ], "projects_workgroups": [ { "id": "diagvis", "workgroup_id": "vis", "drupal_id": 4256, "drupal_path": "/research/projects/diagvis", "name": "DiagVis: Diagnostic Visualization for Medical Applications", "name_de": null, "short_title": "diagvis", "website": null, "status": "active", "short_abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. ", "abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. \tReliability, stability and usability of the developed methods should be examined through the integration to a medical workstation to allow a clinical evaluation.", "start_date": "2006-01-01", "end_date": "2009-12-31", "leader_id": 166, "logo": { "name": "logo.png", "path": "project:diagvis", "type": "image/png", "size": 96193, "orig_name": "logo.png", "thumb_url": "https://www.cg.tuwien.ac.at/research/projects/diagvis/logo:thumb{{size}}.png", "thumb_image_sizes": [ 120, 300 ] }, "funding_organisations": [ { "id": "agfa", "contract_number": null, "comment": null } ], "research_areas": [], "publications": [ "bruckner-2008-IVV", "haidacher-2008-vcbm", "Kohlmann-2007-EBV", "kohlmann-2007-livesync", "kohlmann-2008-lse", "kohlmann-2009-cp", "kohlmann-2009-lssl", "TR-186-2-06-04", "TR-186-2-07-11", "TR-186-2-08-01", "TR-186-2-08-04", "TR-186-2-08-10", "TR-186-2-08-14" ], "url": "https://www.cg.tuwien.ac.at/research/projects/diagvis", "__class": "Project" } ], "url": "https://www.cg.tuwien.ac.at/research/publications/2008/TR-186-2-08-14/", "__class": "Publication" }, { "id": "haidacher-2008-vcbm", "type_id": "inproceedings", "tu_id": null, "repositum_id": null, "title": "Information-based Transfer Functions for Multimodal Visualization", "date": "2008-10", "abstract": "Transfer functions are an essential part of volume visualization. In multimodal visualization at least two values\r\nexist at every sample point. Additionally, other parameters, such as gradient magnitude, are often retrieved for\r\neach sample point. To find a good transfer function for this high number of parameters is challenging because of\r\nthe complexity of this task. In this paper we present a general information-based approach for transfer function\r\ndesign in multimodal visualization which is independent of the used modality types. Based on information theory,\r\nthe complex multi-dimensional transfer function space is fused to allow utilization of a well-known 2D transfer\r\nfunction with a single value and gradient magnitude as parameters. Additionally, a quantity is introduced which\r\nenables better separation of regions with complementary information. The benefit of the new method in contrast to\r\nother techniques is a transfer function space which is easy to understand and which provides a better separation\r\nof different tissues. The usability of the new approach is shown on examples of different modalities.", "authors_et_al": false, "substitute": null, "main_image": { "description": "Multimodal Visualization of CT and MRI", "filetitle": "CT-MRI", "main_file": false, "use_in_gallery": true, "access": "public", "image_width": 1446, "image_height": 1446, "name": "haidacher-2008-vcbm-CT-MRI.jpg", "type": "image/jpeg", "size": 2466928, "path": "Publication:haidacher-2008-vcbm", "url": "https://www.cg.tuwien.ac.at/research/publications/2008/haidacher-2008-vcbm/haidacher-2008-vcbm-CT-MRI.jpg", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2008/haidacher-2008-vcbm/haidacher-2008-vcbm-CT-MRI:thumb{{size}}.png" }, "sync_repositum_override": null, "repositum_presentation_id": null, "authors": [ { "id": 597, "drupal_id": 316, "orcid_id": null, "website": "https://www.cg.tuwien.ac.at/staff/MartinHaidacher", "firstname": "Martin", "lastname": 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"orcid_id": null, "website": "https://www.cg.tuwien.ac.at/staff/ArminKanitsar", "firstname": "Armin", "lastname": "Kanitsar", "searchname": "Armin Kanitsar", "is_teacher": false, "name": "Armin Kanitsar", "publications": [ "bruckner-2005-ICV", "bruckner-2006-ICE", "bruckner-2008-IVV", "coto-2005-MAC", "Csebfalvi-2002-SBICG", "Csebfalvi-2002-Smo", "dataset-christmastree", "facial2004", "Grimm-2003-CPU", "Grimm-2003-HYP", "grimm-2004-arefined", "GRIMM-2004-FDM", "GRIMM-2004-FDMX", "GRIMM-2004-FDMX-P", "grimm-2004-memory", "GRIMM-2004-PPC", "grimm-2004-volume", "groeller-2005-dia", "haidacher_2010_statTF", "haidacher-2008-vcbm", "Kanitsar-2001-Aut", "Kanitsar-2001-Per", "Kanitsar-2001-Pos", "Kanitsar-2001-PVI", "kanitsar-2002-Chr", "Kanitsar-2002-Chri", "Kanitsar-2002-CPR", "kanitsar-2002-CPRX", "Kanitsar-2003-ADV", "Kanitsar-2003-Adva", "Kanitsar-2003-CTa", "Kanitsar-2003-Dem", "Kanitsar-2004-Dia", "Kanitsar-thesis", "Knapp-2003-SAT", "knapp-2004-semi", "Koechl-2003-Com", 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The project focuses on radiological needs but also on related disciplines like surgical applications. ", "abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. \tReliability, stability and usability of the developed methods should be examined through the integration to a medical workstation to allow a clinical evaluation.", "start_date": "2006-01-01", "end_date": "2009-12-31", "leader_id": 166, "logo": { "name": "logo.png", "path": "project:diagvis", "type": "image/png", "size": 96193, "orig_name": "logo.png", "thumb_url": "https://www.cg.tuwien.ac.at/research/projects/diagvis/logo:thumb{{size}}.png", "thumb_image_sizes": [ 120, 300 ] }, "funding_organisations": [ { "id": "agfa", "contract_number": null, "comment": null } ], "research_areas": [], "publications": [ "bruckner-2008-IVV", "haidacher-2008-vcbm", "Kohlmann-2007-EBV", "kohlmann-2007-livesync", "kohlmann-2008-lse", "kohlmann-2009-cp", "kohlmann-2009-lssl", "TR-186-2-06-04", "TR-186-2-07-11", "TR-186-2-08-01", "TR-186-2-08-04", "TR-186-2-08-10", "TR-186-2-08-14" ], "url": "https://www.cg.tuwien.ac.at/research/projects/diagvis", "__class": "Project" } ], "url": "https://www.cg.tuwien.ac.at/research/publications/2008/haidacher-2008-vcbm/", "__class": "Publication" }, { "id": "kohlmann-2008-lse", "type_id": "inproceedings", "tu_id": null, "repositum_id": null, "title": "LiveSync++: Enhancements of an Interaction Metaphor", "date": "2008-05", "abstract": "The LiveSync interaction metaphor allows an efficient and non-intrusive integration of 2D and 3D visualizations in medical workstations. This is achieved by synchronizing the 2D slice view with the volumetric view. The synchronization is initiated by a simple\r\npicking on a structure of interest in the slice view. In this paper we\r\npresent substantial enhancements of the existing concept to improve its usability. First, an efficient parametrization for the derived parameters is presented, which allows hierarchical refinement of the\r\nsearch space for good views. Second, the extraction of the feature of\r\ninterest is performed in a way, which is adapting to the volumetric extent of the feature. The properties of the extracted features are utilized to adjust a predefined transfer function in a feature-enhancing manner. Third, a new interaction mode is presented, which allows the integration of more knowledge about the user-intended visualization, without increasing the interaction effort. 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Current applications therefore make scarce use of volume rendering and instead primarily employ 2D views generated through standard techniques such as multi-planar reconstruction (MPR). However, in many cases 3D renditions can supply additional useful information. This paper discusses ongoing work which aims to improve the integration of 3D visualization into the diagnostic workflow by automatically generating meaningful renditions based on minimal user interaction. 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{ "description": "", "filetitle": "Paper", "main_file": true, "use_in_gallery": false, "access": "public", "name": "bruckner-2008-IVV-Paper.pdf", "type": "application/pdf", "size": 2240970, "path": "Publication:bruckner-2008-IVV", "url": "https://www.cg.tuwien.ac.at/research/publications/2008/bruckner-2008-IVV/bruckner-2008-IVV-Paper.pdf", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2008/bruckner-2008-IVV/bruckner-2008-IVV-Paper:thumb{{size}}.png" } ], "projects_workgroups": [ { "id": "diagvis", "workgroup_id": "vis", "drupal_id": 4256, "drupal_path": "/research/projects/diagvis", "name": "DiagVis: Diagnostic Visualization for Medical Applications", "name_de": null, "short_title": "diagvis", "website": null, "status": "active", "short_abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. ", "abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. \tReliability, stability and usability of the developed methods should be examined through the integration to a medical workstation to allow a clinical evaluation.", "start_date": "2006-01-01", "end_date": "2009-12-31", "leader_id": 166, "logo": { "name": "logo.png", "path": "project:diagvis", "type": "image/png", "size": 96193, "orig_name": "logo.png", "thumb_url": "https://www.cg.tuwien.ac.at/research/projects/diagvis/logo:thumb{{size}}.png", "thumb_image_sizes": [ 120, 300 ] }, "funding_organisations": [ { "id": "agfa", "contract_number": null, "comment": null } ], "research_areas": [], "publications": [ "bruckner-2008-IVV", "haidacher-2008-vcbm", "Kohlmann-2007-EBV", "kohlmann-2007-livesync", "kohlmann-2008-lse", "kohlmann-2009-cp", "kohlmann-2009-lssl", "TR-186-2-06-04", "TR-186-2-07-11", "TR-186-2-08-01", "TR-186-2-08-04", "TR-186-2-08-10", "TR-186-2-08-14" ], "url": "https://www.cg.tuwien.ac.at/research/projects/diagvis", "__class": "Project" } ], "url": "https://www.cg.tuwien.ac.at/research/publications/2008/bruckner-2008-IVV/", "__class": "Publication" }, { "id": "kohlmann-2007-livesync", "type_id": "journalpaper", "tu_id": null, "repositum_id": null, "title": "LiveSync: Deformed Viewing Spheres for Knowledge-Based Navigation", "date": "2007-10", "abstract": "Although real-time interactive volume rendering is available even for very large data sets, this visualization method is used quite rarely in the clinical practice. We suspect this is because it is very complicated and time consuming to adjust the parameters to achieve meaningful results. The clinician has to take care of the appropriate viewpoint, zooming, transfer function setup, clipping planes and other parameters. Because of this, most often only 2D slices of the data set are examined. Our work introduces LiveSync, a new concept to synchronize 2D slice views and volumetric views of medical data sets. Through intuitive picking actions on the slice, the users define the anatomical structures they are interested in. The 3D volumetric view is updated automatically with the goal that the users are provided with expressive result images. To achieve this live synchronization we use a minimal set of derived information without the need for segmented data sets or data-specific pre-computations. The components we consider are the picked point, slice view zoom, patient orientation, viewpoint history, local object shape and visibility. We introduce deformed viewing spheres which encode the viewpoint quality for the components. A combination of these deformed viewing spheres is used to estimate a good viewpoint. 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"https://www.cg.tuwien.ac.at/research/publications/2007/kohlmann-2007-livesync/kohlmann-2007-livesync-video:thumb{{size}}.png", "video_mp4": "https://www.cg.tuwien.ac.at/research/publications/2007/kohlmann-2007-livesync/kohlmann-2007-livesync-video:video.mp4" } ], "projects_workgroups": [ { "id": "diagvis", "workgroup_id": "vis", "drupal_id": 4256, "drupal_path": "/research/projects/diagvis", "name": "DiagVis: Diagnostic Visualization for Medical Applications", "name_de": null, "short_title": "diagvis", "website": null, "status": "active", "short_abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. ", "abstract": "The DiagVis (Diagnostic Visualization) project aims to facilitate and to improve medical diagnostics. The project focuses on radiological needs but also on related disciplines like surgical applications. \tReliability, stability and usability of the developed methods should be examined through the integration to a medical workstation to allow a clinical evaluation.", "start_date": "2006-01-01", "end_date": "2009-12-31", "leader_id": 166, "logo": { "name": "logo.png", "path": "project:diagvis", "type": "image/png", "size": 96193, "orig_name": "logo.png", "thumb_url": "https://www.cg.tuwien.ac.at/research/projects/diagvis/logo:thumb{{size}}.png", "thumb_image_sizes": [ 120, 300 ] }, "funding_organisations": [ { "id": "agfa", "contract_number": null, "comment": null } ], "research_areas": [], "publications": [ "bruckner-2008-IVV", "haidacher-2008-vcbm", "Kohlmann-2007-EBV", "kohlmann-2007-livesync", "kohlmann-2008-lse", "kohlmann-2009-cp", "kohlmann-2009-lssl", "TR-186-2-06-04", "TR-186-2-07-11", "TR-186-2-08-01", "TR-186-2-08-04", "TR-186-2-08-10", "TR-186-2-08-14" ], "url": "https://www.cg.tuwien.ac.at/research/projects/diagvis", "__class": "Project" } ], "url": "https://www.cg.tuwien.ac.at/research/publications/2007/kohlmann-2007-livesync/", "__class": "Publication" }, { "id": "Kohlmann-2007-EBV", "type_id": "journalpaper", "tu_id": null, "repositum_id": null, "title": "Evaluation of a Bricked Volume Layout for a Medical Workstation based on Java", "date": "2007-01", "abstract": "Volumes acquired for medical examination purposes are constantly increasing in size. For this reason, the computer’s memory is the limiting factor for visualizing the data. Bricking is a well-known concept used for rendering large data sets. The volume data is subdivided into smaller blocks to achieve better memory utilization. Until now, the vast majority of medical workstations use a linear volume layout. We implemented a bricked volume layout for such a workstation based on Java as required by our collaborative company partner to evaluate different common access patterns to the volume data. For rendering, we were mainly interested to see how the performance will differ from the traditional linear volume layout if we generate images of arbitrarily\r\noriented slices via Multi-Planar Reformatting (MPR). Furthermore, we tested access patterns which are crucial for segmentation issues like a random access to data values and a simulated region growing. Our goal was to find out if it makes sense to change the volume layout of a medical workstation to benefit from bricking. We were also interested to identify the tasks where\r\nproblems might occur if bricking is applied. Overall, our results show that it is feasible to use a bricked volume layout in the stringent context of a medical workstation implemented in Java.", "authors_et_al": false, "substitute": null, "main_image": { "description": "", "filetitle": "mpr-views", "main_file": false, "use_in_gallery": false, "access": "public", "image_width": 600, "image_height": 474, "name": "Kohlmann-2007-EBV-mpr-views.jpg", "type": "image/jpeg", "size": 93449, "path": "Publication:Kohlmann-2007-EBV", "url": "https://www.cg.tuwien.ac.at/research/publications/2007/Kohlmann-2007-EBV/Kohlmann-2007-EBV-mpr-views.jpg", "thumb_image_sizes": [ 16, 64, 100, 175, 300, 600 ], "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2007/Kohlmann-2007-EBV/Kohlmann-2007-EBV-mpr-views:thumb{{size}}.png" }, "sync_repositum_override": null, "repositum_presentation_id": null, "authors": [ { "id": 605, "drupal_id": 78, "orcid_id": null, "website": "https://www.cg.tuwien.ac.at/staff/PeterKohlmann", "firstname": "Peter", 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