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        "abstract": "This work describes the processes involved in developing and embedding an agent\nsystem into an artistic real-time installation. The agent system would be responsible for controlling virtual figures on a screen, which interact with users of the installation. It was necessary to develop agents which displayed behavior pre-defined in stories designed by the project team, as well as to ensure that such agents acted in a way that was both\nwell received by visitors, while also stimulating interaction in a way that allowed the project team to conduct research on the interactions between humans and nonhumans. The agent system was implemented using Jason, a Java-based interpreter of the agentprogramming\nlanguage AgentSpeak. Over the course of the project, various agent scenarios were developed, with differing ways of implementation. An iterative process\nwas used for development and regular meetings with project members were instated, to discuss progress and ideas, while utilizing visualizations to aid communication. Behavior of developed agents was plagued by various problems, from being too reliant on reactions towards user behavior, to not interacting enough with active users. Various approaches\nto such problems were tried out, discussed, and documented. During the final installation, agents with indeterministic and emergent behavior were employed. Furthermore, agents were focused on both pursuing their own goals as well as\nconstantly paying attention to visitor behavior. This allowed users to realize agents as a social presence and interact with them in a way that was both novel and natural. ",
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        "title": "Interactive Exploded Views for Presenting DNA Nano-Structures",
        "date": "2018-11-02",
        "abstract": "As the complexity of computer-aided-designed DNA nano-structures progresses day by day, the presentation of these structures is becoming complex. To tackle the main presentation problem, visual occlusion of structure components, we developed a semiautomated method to create effective interactive exploded views for DNA nano-structures, especially for educational purposes. This is done by displacing selected components of a DNA nano-structure based on the four key parameters explosion direction, distance,\norder and component selection. In this thesis we describe three different strategies of choosing the explosion direction, with two of them being defined by the object structure and one by the user. For the two structure defined approaches a method to calculate the explosion distance and three different explosion orders is described. The explosion components for these two approaches are defined by the hierarchical structure of the dataset, that describes the object. The user defined approach lets the user decide on the explosion distance and features one possible explosion order. It also lets the user select the explosion components arbitrarily. The developed application additionally features the possibility to animate an explosion and to use easing in these animations. ",
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        "title": "Game Optimization and Steam Publishing for Swarmlake",
        "date": "2018-10-29",
        "abstract": "Video games are complex pieces of software which require a certain\namount of prototyping and iteration to create the intended experience.\nThey are also real-time applications and need to be performant\nto run at the desired speed.\nMost software architecture is about creating more flexible code and\ntherefore making fewer assumptions which allow for faster prototyping\nand iteration time. However, optimizing is all about making\nassumptions and knowing limitations to be able to improve efficiency.\nSince optimal optimization is usually more natural to guarantee after\nmaking a well-designed game than vice versa, keeping the code\nflexible until the end is a valid compromise. Knowing game optimization\npatterns beforehand can be useful to make sure only the\nleast amount of code needs to be rewritten at the end of a game’s\ndevelopment cycle.\nSuccessfully selling a product such as a video game also requires\nmarketing and distribution. One of the most influential platform to\ndistribute computer games on PC is Steam. Knowing more about\nthe target platform a game releases on can make it more likely to\nmake the optimal decisions in that process.",
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        "date": "2018-10-26",
        "abstract": "There are many situations in our everyday life like events, concerts, landmarks, attraction parks, etc. that often require from visitors to line-up in front of long queues and thus spend hours in waiting. An example of that are the Disneyland amusement parks. They are all very popular and attract a significant number of people every day. For this reason, the lining-up in front of attractions may cost much time – even up to a couple of hours. Despite that, the Disneyland parks are visited by millions of people every year [sta].\nSo to avoid so much waiting they need to make a plan in advance – when and in which\norder to visit the wanted attractions. However, to make such a plan, it could be very time consuming, difficult and even unpleasant, because many prerequisites need to be considered in advance. Having the main problems and annoyances described, the goal of this thesis is to create an assisting application. Its purpose is to give the visitors the possibility to create their own plan for their visit to Tokyo Disneyland. It contains two main assisting components. Firstly, an optimization algorithm calculating an optimized\nroute of the chosen attractions as well as a route visualization for an easy attraction finding. Both will reduce the time for lining-up and pre-planning. Such a technique will make it easier for visitors to see as many attractions as possible for a single day and thus, make the most of their visit.",
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    {
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        "title": "Real-Time Shadows for Large-Scale Geospatial Visualization",
        "date": "2018-10-23",
        "abstract": "A flood is an often unforeseen event, which can happen at any time and causes enormous\ndamage. Simulations are used to predict risks and respond to them early, like in the decision-support system Visdom. The real-time application is useful and offers many possibilities, e.g., simulations of the rising of the river over a certain time or the building of barriers. However, there is a lack of a true-to-life representation of the entire scene, which is important, as the visualization of the results must be understandable also for non-experts, such as decision-makers or the general public. More precisely, shadows are missing in the application so far, although they are particularly well suited to recognize\nrelations of objects to each other.\nThis bachelor thesis covers the implementation of shadows in Visdom to increase the realism of the scene. This is very complex for such big scenes on city or even country scale and requires many self-developed strategies, as there are no ready-made solutions.\nWe present an adaptation of the cascaded shadow maps algorithm, which provides a good way to subdivide the scene for better results in shadow quality. Further improvements are presented to increase the quality of the resulting shadows, as well as avoid occurring artifacts. The result of this work is a flexible visualization of soft shadows for a variety of different-sized scenes in real time, which increase the realism and spatial perception\nand further do not influence the  performance too much.",
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        "date_end": "2018-10-23",
        "date_start": "2018-01-20",
        "matrikelnr": "01227211",
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        "title": "Importance-Driven Exploration of Molecular Dynamics Simulations",
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        "abstract": "The aim of this thesis is a novel real-time visualization approach for exploring molecular dynamics (MD-)simulations. Through the constantly improving hardware and everincreasing computing power, MD-simulations are more easily available. Additionally, they consist of hundreds, thousands or even millions of individual simulation frames and are getting more and more detailed. The calculation of such simulations is no longer limited by algorithms or hardware, nevertheless it is still not possible to efficiently explore this huge amount of simulation data, as animated 3D visualization, with ordinary and well established visualization tools. Using current software tools, the exploration of such long simulations takes too much time and due to the complexity of large molecular scenes, the visualizations highly suffer from visual clutter. It is therefore very likely that the user will miss important events.\nTherefore, we designed a focus & context approach for MD-simulations that guides the\nuser to the most relevant temporal and spatial events, and it is no longer necessary to explore the simulation in a linear fashion. Our contribution can be divided into the following four topics:\n1. Spatial importance through different levels of detail. Depending on the type of\nresearch task, different geometrical representations can be selected for both, focusand context elements.\n2. Importance driven visibility management through ghosting, to prevent context\nelements from occluding focus elements.\n3. Temporal importance through adaptive fast-forward. The playback speed of the\nsimulation is thereby dependent on a single or a combination of multiple importance\nfunctions.\n4. Visual declutter of accumulated frames through motion blur, which additionally\nillustrates the playback speed-up.\nSince the very beginning, this work was developed in close cooperation with biochemists from the Loschmidt Laboratories in Brno, Czech Republic. Together, we analyzed different use cases demonstrating the flexibility of our novel focus & context approach. ",
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        "title": "Sit & Relax: Interactive Design of Body-Supporting Surfaces",
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        "abstract": "We propose a novel method for interactive design of well-fitting body-supporting surfaces that is driven by the pressure distribution on the body's surface. \n\nOur main contribution is an interactive modeling system that utilizes captured body poses and computes an importance field that is proportional to the pressure distribution on the body for a given pose. This distribution indicates where the body should be supported in order to easily hold a particular pose, which is one of the measures of comfortable sitting. \t\n\nUsing our approximation, we propose the entire workflow for interactive design of $C^2$ smooth surfaces which serve as seats, or generally, as body supporting furniture for comfortable sitting. Finally, we also provide a design tool for Rhino/Grasshopper that allows for  interactive creation of single designs or entire multi-person sitting scenarios. We also test the tool with design students and present several results. \t\t\n\nOur method aims at interactive design in order to help designers to create appropriate surfaces digitally without additional empirical design passes.",
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        "doi": "10.1111/cgf.13573",
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        "abstract": "This work presents a new approach of regaining access to stored information and for the visualization of similarities between new information and locally stored data. The fact that bookmarks are cumbersome to use and that there is no possibility to compare web search results with local information motivates the concept of this thesis. The\nimplementation was done as Google Chrome extension and based on the ’Information\nCollage’ environment. In order to improve the perceived ease of use, the visualization was integrated in the search engine results page to avoid a context switch for the user. The\nvisualization uses a word cloud to display similarities and differences between remote and\nlocal information. The word cloud layout focuses on the spatial arrangment and the text\ncolour of the words to encode their association to the remote or the local information.",
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        "title": "Casual Visual Exploration of Large Bipartite Graphs Using Hierarchical Aggregation and Filtering",
        "date": "2018-10",
        "abstract": "Bipartite graphs are typically visualized using linked\nlists or matrices. However, these classic visualization techniques\ndo not scale well with the number of nodes. Biclustering has\nbeen used to aggregate edges, but not to create linked lists\nwith thousands of nodes. In this paper, we present a new\ncasual exploration interface for large, weighted bipartite graphs,\nwhich allows for multi-scale exploration through hierarchical\naggregation of nodes and edges using biclustering in linked\nlists. We demonstrate the usefulness of the technique using two\ndata sets: a database of media advertising expenses of public\nauthorities and author-keyword co-occurrences from the IEEE\nVisualization Publication collection. Through an insight-based\nstudy with lay users, we show that the biclustering interface leads\nto longer exploration times, more insights, and more unexpected\nfindings than a baseline interface using only filtering. However,\nusers also perceive the biclustering interface as more complex.",
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    {
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        "title": "Discrete Optimization on Graphs and Grids for the Creation of Navigational and Artistic Imagery",
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        "abstract": "Statistical modeling is a key technology for generating business value from data. While the number of available algorithms and the need for them is growing, the number of people with the skills to effectively use such methods lags behind. Many application domain experts find it hard to use and trust algorithms that come as black boxes with insufficient interfaces to adapt. The field of Visual Analytics aims to solve this problem by a human-oriented approach that puts users in control of algorithms through interactive\nvisual interfaces. However, designing accessible solutions for a broad set of users while re-using existing, proven algorithms poses significant challenges for the design of analytical infrastructures, visualizations, and interactions.\nThis thesis provides multiple contributions towards a more human-oriented modeling\nprocess: As a theoretical basis, it investigates how user involvement during the execution of algorithms can be realized from a technical perspective. Based on a characterization of needs regarding intermediate feedback and control, a set of formal strategies to realize user involvement in algorithms with different characteristics is presented. Guidelines\nfor the design of algorithmic APIs are identified, and requirements for the re-use of algorithms are discussed. From a survey of frequently used algorithms within R, the\nthesis concludes that a range of pragmatic options for enabling user involvement in new and existing algorithms exist and should be used. After these conceptual considerations, the thesis presents two methodological contributions that demonstrate how even inexperienced modelers can be effectively involved in the\nmodeling process. First, a new technique called TreePOD guides the selection of decision trees along trade-offs between accuracy and other objectives, such as interpretability.\nUsers can interactively explore a diverse set of candidate models generated by sampling the parameters of tree construction algorithms. Visualizations provide an overview of possible tree characteristics and guide model selection, while details on the underlying machine learning process are only exposed on demand. Real-world evaluation with\ndomain experts in the energy sector suggests that TreePOD enables users with and without statistical background a confident identification of suitable decision trees. As the second methodological contribution, the thesis presents a framework for interactive\nbuilding and validation of regression models. The framework addresses limitations of automated regression algorithms regarding the incorporation of domain knowledge, identifying local dependencies, and building trust in the models. Candidate variables for model refinement are ranked, and their relationship with the target variable is visualized to support an interactive workflow of building regression models. A real-world case study and feedback from domain experts in the energy sector indicate a significant effort\nreduction and increased transparency of the modeling process.\nAll methodological contributions of this work were implemented as part of a commercially distributed Visual Analytics software called Visplore. As the last contribution, this thesis reflects upon years of experience in deploying Visplore for modeling-related tasks in the energy sector. Dissemination and adoption are important aspects of making statistical\nmodels more accessible for domain experts, making this work relevant for practitioners\nand application-oriented researchers alike.",
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    {
        "id": "ohrhallinger_stefan-2018-pg",
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        "title": "StretchDenoise: Parametric Curve Reconstruction with Guarantees by Separating Connectivity from Residual Uncertainty of Samples",
        "date": "2018-08-24",
        "abstract": "We reconstruct a closed denoised curve from an unstructured and highly noisy 2D point cloud.\nOur proposed method uses a two-pass approach: Previously recovered manifold connectivity is used for ordering noisy samples along this manifold and express these as residuals in order to enable parametric denoising.\nThis separates recovering low-frequency features from denoising high frequencies, which avoids over-smoothing.\nThe noise probability density functions (PDFs) at samples are either taken from sensor noise models or from estimates of the connectivity recovered in the first pass.\nThe output curve balances the signed distances (inside/outside) to the samples.\nAdditionally, the angles between edges of the polygon representing the connectivity become minimized in the least-square sense.\nThe movement of the polygon's vertices is restricted to their noise extent, i.e., a cut-off distance corresponding to a maximum variance of the PDFs.\nWe approximate the resulting optimization model, which consists of higher-order functions, by a linear model with good correspondence.\nOur algorithm is parameter-free and operates fast on the local neighborhoods determined by the connectivity.\n%We augment a least-squares solver constrained by a linear system to also handle bounds.\nThis enables us to guarantee stochastic error bounds for sampled curves corrupted by noise, e.g., silhouettes from sensed data, and we improve on the reconstruction error from ground truth.\nSource code is available online. An extended version is available at: https://arxiv.org/abs/1808.07778",
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        "booktitle": "Proceedings of Pacific Graphics 2018",
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        "editor": "H. Fu, A. Ghosh, and J. Kopf (Guest Editors)",
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    {
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        "title": "Data-Driven User Guidance in Multi-Attribute Data Exploration",
        "date": "2018-08-18",
        "abstract": "Seeking relationships in multi-dimensional datasets is a common task, but can quickly\nbecome tedious due to the heterogeneity and increasing size of the data. Its visualization can be approached in a variety of ways: (i) projection techniques decrease the number of dimensions to a fraction before visualizing items, creating clusters where similarities in the high-level space may be derived; (ii) overview visualization techniques display selected\nattributes and all of their items’ values to discover patterns and find relationships; (iii) tabular techniques give an insight into the individual items and thus favor their detailed\nanalysis and exploration.\nHowever, while the interactive selection of a data subset during exploration is most easily done with tabular visualizations, finding relationships and patterns is not. Also, with overview techniques the number of attribute combinations quickly outgrows reasonable dimensions.\nIn this thesis, a data-driven touring process for Visual Analytics (VA) tools is presented that guides users in discovering relationships for a data subset of their interest. Based on the user’s selection, attributes that show some kind of similarity are presented. The selection can be done on attribute and item level. While a selected attribute is compared to all other attributes in the dataset, item sets are compared to the individual\ncategories of attributes. This comparison can be based on a number of similarity measures.\nTo cope with heterogeneity of data types, numerical attributes are discretized to achieve maximum similarity. In hierarchical attributes, the most similar subtree is sought. The touring process is also independent of the data domain and its visualization. This independence is demonstrated by the use of three different datasets and the integration of the touring process into two VA systems. These extended systems were shown to medical experts of the Kepler University Hospital, who will use them in the near future. Their feedback was incorporated to improve the guidance process.",
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    {
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        "title": "Implementing Virtual Ray Lights for Rendering Scenes with Participating Media",
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        "abstract": "This thesis documents the full implementation of the method Virtual Ray Lights for\nRendering Scenes with Participating Media. As a basic understanding of the foundations\nof rendering and related approaches is necessary to understand this complex method,\nthese foundations are discussed first. There, the rendering equation and the physical\nbehaviour of light is described. Additionally, rendering approaches like Recursive Ray\nTracing and Photon Mapping that do not consider participating media, as well as methods\nlike Volumetric Photon Mapping, Virtual Point Lights and Photon Beams, which are\nable to render participating media, are evaluated.\nFor the discussion on Virtual Ray Lights, the evaluation takes place in three parts.\nFirst, the method is discussed in general with a mathematical analysis. Afterwards,\nimplementation details are evaluated where pseudocode examples are provided. Lastly,\nthe rendered results of the implementation are evaluated thoroughly. These results are\nalso compared to provided images from various research papers.\nThe goal of this thesis is to provide an implementation of Virtual Ray Lights, as\nwell as providing the tools to implement this method in other projects. We provide the\nwell-documented source code for this project, with the scene settings to recreate the\nexamples.",
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    {
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        "title": "Progressive Real-Time Rendering of Unprocessed Point Clouds",
        "date": "2018-08",
        "abstract": "Rendering tens of millions of points in real time usually requires either high-end \ngraphics cards, or the use of spatial acceleration structures. \nWe introduce a method to progressively display as many points as the GPU memory can hold in real time \nby reprojecting what was visible and randomly adding additional points to uniformly \nconverge towards the full result within a few frames. \n\nOur method heavily limits the number of points that have to be rendered each frame and \nit converges quickly and in a visually pleasing way, which makes it suitable even \nfor notebooks with low-end GPUs. \nThe data structure consists of a randomly shuffled array of points that is incrementally generated \non-the-fly while points are being loaded. \n\nDue to this, it can be used to directly view point clouds in common sequential formats such as LAS or LAZ while they are being loaded and without the need to generate spatial acceleration structures in advance, as long as the data fits into GPU memory.",
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        "title": "Web-Based Osteoarthritis-Analysis Generating Data from Native Libraries and Machine-Learning Models",
        "date": "2018-07-08",
        "abstract": "As artificial intelligence (AI) progresses with seemingly unstoppable speed, its wide field of applications broadens by the day. One area where AI advancements appear to be\nespecially promising is their employment in the medical sector. Nowadays, due to the\nwider availability of processing power, algorithms based on neuronal networks can be used to generate far more data in areas where it previously seemed unthinkable.\nTraditional image-processing-algorithms often utilize computer vision (CV)-algorithms such as edge-detection to generate data from pixel input. While this method of gaining data worked well in the past, AI can help to improve the precision of such an analysis. The area I focussed on in this thesis is the generation of data from x-ray images of the knee joint. ImageBiopsy Lab (IB Lab)’s algorithms relied heavily on CV-based analysis\nfor the diagnosis of osteoarthritis (OA) in the knee. While this yielded good results in the past, this work will show that the use of deep neuronal networks improves accuracy in a significant way.\nFurther, neuronal networks can provide additional information that was a lot harder to be gained before, such as the laterality of a given image.\nThe aim of this project was to diagnose OA faster and more precisely than in the\npast and to embed it into a web-based solution for broader accessibility. To showcase the benefits of the described method, at the time of writing, our software is in the stage of\nbeing rolled out in a hospital in Lower Austria.\nBecause of the advancements mentioned above, this work will focus on the description and comparison of gaining information from x-ray images for a meaningful and efficient diagnosis of OA in the knee. ",
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        "title": "Progressive Annotation of Schematic Railway Maps",
        "date": "2018-07",
        "abstract": "Octilinear network layouts are commonly used as the schematic\nrepresentation of railway maps due to their enhanced readability.\nHowever, it is often time-consuming to place station names on such\nrailway maps by trial and error, especially within the limited labeling\nspace around interchange stations. This paper presents a progressive\napproach to placing station names around stations in schematic railway\nmaps for better automation of map labeling processes. The idea behind\nour approach is to annotate stations in dense downtown areas around the\ninterchange stations first and then those in sparse rural areas. This is\nachieved by introducing the sum of geodesic distances over the railway\nnetwork to identify the proper order in which to annotate stations. In\nthe actual annotation process, we increase the labeling space around the\nrailway network when necessary by progressively stretching railway line\nsegments while retaining their original directions, which allows us to\nrespect the original schematic layout as much as possible. We present\nseveral experimental results to demonstrate the effectiveness of the\nproposed approach, together with a discussion on parameter tuning in our\nformulation.",
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        "booktitle": "Proceedings of the 22nd International Conference Information Visualisation (IV)",
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        "title": "Advances in the Multimodal 3D Reconstruction and Modeling of Buildings",
        "date": "2018-06-27",
        "abstract": "Driven by the need for faster and more efficient workflows in the digitization of urban environments, the availability of affordable 3D data-acquisition systems for buildings has drastically increased in the last years: Laser scanners and  photogrammetric methods both produce millions of 3D points within minutes of acquisition time. They are applied both\non street-level as well as from above using drones, and are used to enhance traditional\ntachymetric measurements in surveying. However, these 3D data points are not the only available information: Extracted meta data from images, simulation results (e.g., from light simulations), 2D floor plans, and semantic tags – especially from the upcoming Building Information Modeling (BIM) systems – are becoming increasingly important.\nThe challenges this multimodality poses during the reconstruction of CAD-ready 3D\nbuildings are manifold: Apart from handling the enormous size of the data that is\ncollected during the acquisition steps, the different data sources must also be registered to each other in order to be applicable in a common context – which can be difficult in case of missing or erroneous information. Nevertheless, the potential for improving both\nthe workflow efficiency as well as the quality of the reconstruction results is huge: Missing information can be substituted by data from other sources, information about spatial or semantic relations can be utilized to overcome limitations, and interactive modeling\ncomplexity can be reduced (e.g., by limiting interactions to a two-dimensional space).\nIn this thesis, four publications are presented which aim at providing freely combinable “building blocks” for the creation of helpful methods and tools for advancing the field of Multimodal Urban Reconstruction. First, efficient methods for the calculation of shadows cast by area light sources are presented – one with a focus on the most efficient generation of physically accurate penumbras, and the other one with the goal of reusing\nsoft shadow information in consecutive frames to avoid costly recalculations. Then, a novel, optimization-supported reconstruction and modeling tool is presented, which employs sketch-based interactions and snapping techniques to create water-tight 3D building models. An extension to this system is demonstrated consecutively: There, 2D photos act as the only interaction canvas for the simple, sketch-based creation of building geometry and the corresponding textures. Together, these methods form a solid foundation for the creation of common, multimodal environments targeted at the reconstruction of 3D building models.",
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    {
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        "title": "Four Texture Algorithms for Recognizing Early Signs of Osteoarthritis. Data from the Multicenter Osteoarthritis Study.",
        "date": "2018-06-27",
        "abstract": "This master thesis aims to provide an in-depth comparison of four texture algorithms\nin their capacity of discriminating patients with osteoarthritis (OA) from the ones without, recognizing early signs of Osteoarthritis and tracking disease progression from 2D radiographs of the knee trabecular bone (TB). Given the fractal properties of the trabecular bone (TB), two fractal-based algorithms (Bone Variance Value (BVV) and Bone Score Value (BSV)) that try to characterize the complexity of the underlying 3D structure of the bone are presented. The third algorithm (Bone Entropy Value (BEV), based on Shannon’s Entropy) stems from the information theory and aims to describe the bone structure in terms of information complexity. The last algorithm (Bone Coocurrence Value (BCV)) is based on the co-occurrence matrix of an image and describes the image texture in terms of certain Haralick features. If successful, such algorithms posses a great potential to lower the costs (financial, time) associated with the diagnosis of osteoarthritis (OA) through automation of the procedure, and with the treatment. The earlier treatments and risk reduction measures are less costly than the\nprocedures involved due to a more advanced stage of the disease (surgery, implants, etc.).\nFirst, a motivation for the detection of early osteoarthritis (OA) is given. Second, a detailed description and mathematical background of the algorithms are presented and validated on sample, artificial data. Third, the employed data sets used for classification tests are introduced. Fourth, the statistical methods and neural network models employed are presented and discussed. Fifth, the features produced by each algorithm are discussed and their independent and combined capacity of discriminating between bones with early signs of OA and healthy bones. Also the capacity of tracking OA progression\nthrough the years is quantified by statistical tests. Also in this part we present the best classification scores obtained from the most optimal neural networks for each use case. Finally, thoughts on future improvements and the generalization of the algorithms in other anatomical contexts, for other diseases or in other fields, like histology and\nmammography, are made.\nIn this work we show that the state-of-the-art in OA prediction can be surpassed by\nutilizing only models based on texture features alone. Our gender-stratified analysis produces a prediction score of 83% for males and 81% for females in terms of Area Under the Receiver Operating Characteristic Curve (ROC-AUC).",
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        "title": "A Preview to Adenita: Visualization and Modeling of DNA Nanostructures",
        "date": "2018-06-08",
        "abstract": "We present Adenita, an open-source software that aims to provide an integrated in silico\ndesign toolkit for DNA Nanostructures. It facilitates the modular assembly of pre-existing\nand de novo designs, regardless of the used approach. Adenita is being developed in the\ncontext of the MARA project [1], a highly ambitious project aiming to produce a DNA\nnanorobot capable of targeted cell lyses. Currently, the existing design and visualization\ntools are insufficient to solve the specific challenges in our project. We aim to overcome\nthese limitations with Adenita, a new semi-automated approach that we are developing as\nthe MARA project advances. Adenita integrates visualizations [2] with user interactions and\nalgorithms in a semi-manual approach. At the core, we use a hierarchical data model that\nenables us to combine both a top-down (DAEDALUS [3]) and a bottom-up (caDNAno [4])\ndesign approach of the DNA Nanostructure. From the DNA data model, we create smooth\nvisualizations that depict the structure in multiple scales from its atomic details to a highlevel\ngeometric representation of the target shape. In addition, we employ different layouts\nfor the same structure [5]: 3D structural representations, 2D caDNAno-style diagrams, and\n1D display of the linear sequences. Creators enable the parametrized generation of\nstructural motifs, while Manipulators facilitate the advanced modifications of the structural\nproperties, such as connecting components and adding bridging strands. Analysis of the\ndesigns is still in a preliminary phase, but it already enables the straightforward estimation\nof distances and the melting temperatures [6] of binding regions. The first DNA\nnanostructures that we designed with the new tool are now under experimental evaluation.\n",
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        "tu_id": null,
        "repositum_id": null,
        "title": "Optimized Sorting for Out-of-Core Surface Reconstruction",
        "date": "2018-05-04",
        "abstract": "In recent years the amount of acquisition methods for point clouds has been increasing consequently and it is getting more and more interesting for society. Even if it is possible to render point clouds directly, nowadays there exist many more algorithms which deal with triangle meshes than point clouds. For example 3D printer software requires watertight meshes as input. This makes automatic conversion of point sets to triangle meshes an important research topic. The aim of this Bachelor Thesis was to implement a plugin for Scanopy (a point cloud editing and rendering program) which can convert point clouds with hundreds of millions of samples in such a detailed degree that the data exceeds common main memory sizes. Therefore, an out-of-core algorithm was needed. The used out-of-core Poisson surface reconstruction approach requires the sorting of the input point samples in a preprocessing step. In this Bachelor Thesis it is shown that the sorting of the data with an optimized multithreaded merge sort algorithm can improve the total required time for the reconstruction process significantly. Further, this work indicates a problem which occurs while reconstructing meshes with a Poisson based reconstruction approach from scans of an open terrain. The problem leads to large unnecessary triangles which hide the reconstructed surface. A very basic solution approach for this problem is also stated.",
        "authors_et_al": false,
        "substitute": null,
        "main_image": {
            "description": null,
            "filetitle": "image",
            "main_file": false,
            "use_in_gallery": false,
            "access": "public",
            "image_width": 758,
            "image_height": 836,
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            "type": "image/png",
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            "thumb_image_sizes": [
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        "sync_repositum_override": null,
        "repositum_presentation_id": null,
        "authors": [
            1035
        ],
        "date_end": "2018-05-04",
        "date_start": "2012-10-01",
        "matrikelnr": "0825828",
        "supervisor": [
            614,
            193
        ],
        "research_areas": [
            "Geometry"
        ],
        "keywords": [
            "surface reconstruction",
            "out-of-core",
            "point processing"
        ],
        "weblinks": [],
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                "image_height": 836,
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            }
        ],
        "projects_workgroups": [
            "TERAPOINTS"
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        "url": "https://www.cg.tuwien.ac.at/research/publications/2018/mazza-2012-bakk/",
        "__class": "Publication"
    },
    {
        "id": "Schernthaner-2017-MCP",
        "type_id": "journalpaper_notalk",
        "tu_id": null,
        "repositum_id": null,
        "title": "Multipath Curved Planar Reformations of Peripheral CT Angiography: Diagnostic Accuracy and Time Efficiency",
        "date": "2018-05-01",
        "abstract": "Objectives To compare diagnostic performance and time\nefficiency between 3D multipath curved planar reformations\n(mpCPRs) and axial images of CT angiography for\nthe pre-interventional assessment of peripheral arterial\ndisease (PAD), with digital subtraction angiography as the\nstandard of reference.\nMethods Forty patients (10 females, mean age 72 years),\nreferred to CTA prior to endovascular treatment of PAD,\nwere prospectively included and underwent peripheral CT\nangiography. A semiautomated toolbox was used to render\nmpCPRs. Twenty-one arterial segments were defined in\neach leg; for each segment, the presence of stenosis[70%\nwas assessed on mpCPRs and axial images by two readers,\nindependently, with digital subtraction angiography as gold\nstandard.\nResults Both readers reached lower sensitivity (Reader 1:\n91 vs. 94%, p = 0.08; Reader 2: 89 vs. 93%, p = 0.03) but\nsignificantly higher specificity (Reader 1: 94 vs. 89%,\np\\0.01; Reader 2: 96 vs. 95%, p = 0.01) with mpCPRs\nthan with axial images. Reader 1 achieved significantly\nhigher accuracy with mpCPRs (93 vs. 91%, p = 0.02), and Reader 2 had similar overall accuracy in both evaluations\n(94 vs. 94%, p = 0.96). Both readers read mpCPRs significantly\nfaster than axial images (Reader 1: 504500 based\non mpCPRs vs. 704000 based on axial images; Reader 2:\n404100 based on mpCPRs vs. 605700 based on axial images;\np\\0.01).\nConclusions mpCPRs are a promising 3D reformation\ntechnique that facilitates a fast assessment of PAD with\nhigh diagnostic accuracy.",
        "authors_et_al": false,
        "substitute": null,
        "main_image": null,
        "sync_repositum_override": null,
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        "authors": [
            1531,
            1532,
            1533,
            1288,
            869,
            166,
            1289,
            1047
        ],
        "doi": "10.1007/s00270-017-1846-3",
        "issn": "0174-1551",
        "journal": "CardioVascular and Interventional Radiology",
        "number": "5",
        "pages_from": "718",
        "pages_to": "725",
        "volume": "41",
        "research_areas": [],
        "keywords": [
            "PAD",
            "CTA",
            "3D reformation",
            "mpCPRs"
        ],
        "weblinks": [
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                "href": "https://link.springer.com/article/10.1007%2Fs00270-017-1846-3",
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                "description": null,
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        "__class": "Publication"
    },
    {
        "id": "birsak-2017-dpe",
        "type_id": "journalpaper_notalk",
        "tu_id": null,
        "repositum_id": null,
        "title": "Dynamic Path Exploration on Mobile Devices",
        "date": "2018-05",
        "abstract": "We present a novel framework for visualizing routes on mobile devices. Our framework is suitable for helping users explore their environment.\nFirst, given a starting point and a maximum route length, the system retrieves nearby points of interest (POIs). Second, we automatically compute an attractive walking path through the environment trying to pass by as many highly ranked POIs as possible. Third, we automatically compute a route visualization that shows the current user position, POI locations via pins, and detail lenses for more information about the POIs. The visualization is an animation of an orthographic map view that follows the current user position. We propose an optimization based on a binary integer program (BIP) that models multiple requirements for an effective placement of detail lenses. We show that our path computation method outperforms recently proposed methods and we evaluate the overall impact of our framework in two user studies.",
        "authors_et_al": false,
        "substitute": null,
        "main_image": {
            "description": "thumbnail",
            "filetitle": "thumbnail",
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            "access": "public",
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            "type": "image/png",
            "size": 1540567,
            "path": "Publication:birsak-2017-dpe",
            "url": "https://www.cg.tuwien.ac.at/research/publications/2018/birsak-2017-dpe/birsak-2017-dpe-thumbnail.png",
            "thumb_image_sizes": [
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            "thumb_url": "https://www.cg.tuwien.ac.at/research/publications/2018/birsak-2017-dpe/birsak-2017-dpe-thumbnail:thumb{{size}}.png"
        },
        "sync_repositum_override": null,
        "repositum_presentation_id": null,
        "authors": [
            836,
            844,
            194,
            193
        ],
        "doi": "10.1109/TVCG.2017.2690294",
        "issn": "1077-2626",
        "journal": "IEEE Transactions on Visualization and Computer Graphics",
        "number": "5",
        "pages_from": "1784",
        "pages_to": "1798",
        "protocol": "null",
        "volume": "24",
        "research_areas": [
            "InfoVis"
        ],
        "keywords": [],
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    },
    {
        "id": "VASILJEVS-2018-PMPL",
        "type_id": "masterthesis",
        "tu_id": null,
        "repositum_id": null,
        "title": "Procedural Modelling of Park Layouts",
        "date": "2018-05",
        "abstract": "Procedural Modelling in Computer Graphics automates content generation, where commonly\nmanual methods have been employed, as in using modelling applications like Maya.\nGrammar-based methods allow to describe creation of objects at a higher level, encoding\ndesign decisions in rule files and enabling generation of infinite variations by just altering\nthe parameters. Methods for the synthesis of landscapes, street networks, buildings,\nand vegetation have been described. In the context of the city generation, CityEngine\ncombines some such techniques into a commercial solution that can be used to generate\nthe whole city at once.\nIn the context of park synthesis, the process is divided into layout generation and placement\nof objects in it. Typically, a park layout is either created manually and inserted into\nthe reserved area, or a shape grammar designed for building synthesis is employed. In the\nfirst case, a change to the design or the surrounding regions could result in considerable\nmodifications required of the user. At the present moment, generation of parks and green\nspaces in a city is rather limited and mainly focused on vegetation placement.\nThe aim of our work was to design a method for park layout synthesis, which when\ncombined with basic placement methods could be used to create believable park models.\nBased on the observation of real-life parks and 3D models of parks, we have derived a\nnumber of patterns, which have been translated into the rules of our novel shape grammar.\nIn particular, we introduce a rule for creating curved regions, which, to our knowledge,\nhas not been addressed yet at this level in grammar-based methods. We also introduce a\nnovel way to index arbitrary subset of the boundary and provide an additional insetting\noperation based on that. In our work we have considered the context of CityEngine as a\npossible use case.",
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        "substitute": null,
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            "filetitle": "image",
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        "authors": [
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        ],
        "date_end": "2018-07-16",
        "date_start": "2016",
        "diploma_examina": "2018-07-16",
        "matrikelnr": "0727773",
        "open_access": "yes",
        "supervisor": [
            1303,
            193
        ],
        "research_areas": [
            "Modeling"
        ],
        "keywords": [
            "procedural modeling",
            "park layouts"
        ],
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    {
        "id": "Kathi-2018-VRB",
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        "repositum_id": null,
        "title": "A VR-based user study on the effects of vision impairments on recognition distances of escape-route signs in buildings",
        "date": "2018-04-30",
        "abstract": "In workplaces or publicly accessible buildings, escape routes are signposted according to official norms or international standards that specify distances, angles and areas of interest for the positioning of escape-route signs. In homes for the elderly, in which the residents commonly have degraded mobility and suffer from vision impairments caused by age or eye diseases, the specifications of current norms and standards may be insufficient. Quantifying the effect of symptoms of vision impairments like reduced visual acuity on recognition distances is challenging, as it is cumbersome to find a large number of user study participants who suffer from exactly the same form of vision impairments. Hence, we propose a new methodology for such user studies: By conducting a user study in virtual reality (VR), we are able to use participants with normal or corrected sight and simulate vision impairments graphically. The use of standardized medical eyesight tests in VR allows us to calibrate the visual acuity of all our participants to the same level, taking their respective visual acuity into account. Since we primarily focus on homes for the elderly, we accounted for their often limited mobility by implementing a wheelchair simulation for our VR application.",
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        "date_from": "2018-06-11",
        "date_to": "2018-06-14",
        "doi": "10.1007/s00371-018-1517-7",
        "event": "Computer Graphics International (CGI)",
        "issn": "0178-2789",
        "journal": "The Visual Computer",
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        "location": "Bintan, Indonesia",
        "number": "6-8",
        "open_access": "yes",
        "pages_from": "911",
        "pages_to": "923",
        "volume": "34",
        "research_areas": [
            "Perception",
            "Rendering",
            "VR"
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    {
        "id": "Cai_2018",
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        "date": "2018-04-06",
        "abstract": "As image information is increasing sharply, searching and presenting interesting images\nin large databases have become more and more important in image management. In this\npaper, an optimizing graphical query interface was designed for anatomical search to present more valuable information from the large neuro-anatomical image collections of Drosophila (fruit fly) brains. In order to achieve the goal, the relevant websites of “Fly Circuit”, “Fly Light” and “Allen Mouse Brain Atlas”, and the image management software of PivotViewer and Zegami were investigated firstly. Then, analysis and comparison for\nthe mentioned tools using different perspectives were conducted to define the guidelines for best practices out of them. Based on the findings, several redesigns are proposed for neuro-anatomical query interfaces and part of them were implemented. ",
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        "date_end": "2018-04-06",
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    {
        "id": "waldner-2018-ved",
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        "title": "Visual Data Exploration and Analysis in Emerging Display Environments ",
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        "abstract": "Increasingly powerful computing and display hardware open up entirely new ways for visual data exploration and analysis. Powerful machines and emerging display environments facilitate novel visual exploration techniques, collaborative data analysis, and even immersion into the scientific data. This talk will address the challenges we faced when bringing biomolecular visual analysis tools and complex molecular visualizations into such large, multi-user environments. A special focus lies on interfaces and attention guidance techniques we designed and evaluated to keep the user oriented and reduce visual clutter. ",
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    {
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        "title": "The Travel of a Metabolite",
        "date": "2018-04",
        "abstract": "Biological pathways are chains of molecule interactions and reactions in biological systems that jointly form complex, hierarchical networks. Although several pathway layout algorithms have been investigated, biologists still prefer to use hand-drawn ones, due to their high visual quality relied on domain knowledge. In this project, we propose a visualization for computing metabolic pathway maps that restrict the grouping structure defined by biologists to rectangles and apply orthogonal-style edge routing to simplify edge orientation. This idea is inspired by concepts from urban planning, where we consider reactions as city blocks and built up roads to connect identical metabolites occurred in multiple categories. We provide a story to present how glucose is broken down to phosphoenolpyruvate to release energy, which is often stored in adenosine triphosphate (ATP) in a human body. Finally, we demonstrate ATP is also utilized to synthesize urea to eliminate the toxic ammonia in our body.",
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    {
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        "title": "Exploratory Data Visualization Dashboard for Technical Analysis of Commodity Market Indicators",
        "date": "2018-04",
        "abstract": "Companies and traders working in the commodity market encounter a variety of different\ndata sets, including numerous economic indicators. The analysis of those indicators and\ntheir connection to certain markets can lead to important insights. The understanding of\nthe market can be improved and predictions of the future market development can be\ncreated. However, dozens of economic indicators exist and one of the main challenges is\nto show a clear overview of the indicators and identify those, which show a correlation\nto a certain market. Software tools are often utilised in order to perform the analysis\nof financial markets. However, according to domain experts, they often hit the limit of\nhuman perception capabilities. This thesis focuses on the development of a prototypical\nweb application dashboard, which enables the user to analyse the relation between\na defined commodity market and different economic indicators. Besides the relation\nbetween one indicator and a given market, the possibility to interactively create one’s own\ncomposite indicator, for comparison with the given market, is implemented. The process\nof creating a composite indicator is another challenge as it requires numerous decisions to\nbe made. The dashboard therefore offers a platform for exploring the different composite\nindicator configurations. Moreover, the web-application provides also some visualization\nand interaction techniques, like highlighting, brushing and details-on-demand to enhance\nthe comparison process and amplify human cognition.",
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        "authors": [
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        "date_end": "2018-04",
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    {
        "id": "Birsak2018-SA",
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        "tu_id": null,
        "repositum_id": null,
        "title": "String Art: Towards Computational Fabrication of String Images",
        "date": "2018-04",
        "abstract": "In this paper we propose a novel method for the automatic computation and digital fabrication of artistic string images. String\nart is a technique used by artists for the creation of abstracted images which are composed of straight lines of strings ten-\nsioned between pins distributed on a frame. Together the strings fuse to a perceptible image. Traditionally, artists craft such\nimages manually in a highly sophisticated and tedious design process. To achieve this goal fully automatically we propose a\ncomputational setup driven by a discrete optimization algorithm which takes an ordinary picture as input and converts it into\na connected graph of strings that tries to reassemble the input image best possibly. Furthermore, we propose a hardware setup\nfor automatic digital fabrication of these images using an industrial robot that spans the strings. Finally, we demonstrate the\napplicability of our approach by generating and fabricating a set of real string art images.",
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        "date_from": "2018-04-16",
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        "doi": "10.1111/cgf.13359",
        "event": "EUROGRAPHICS 2018",
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        "location": "Delft, The Netherlands",
        "number": "2",
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        "pages": "accepted",
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        "volume": "37",
        "research_areas": [
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        ],
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    },
    {
        "id": "smiech-2018-tei",
        "type_id": "bachelorthesis",
        "tu_id": null,
        "repositum_id": null,
        "title": "Configurable Text Exploration Interface with NLP for Decision Support",
        "date": "2018-04",
        "abstract": "Having to read and understand lots of text documents and reports on a daily basis can\nbe quite challenging. The intended audience for these reports has limited resources and\nwants to reduce time spent on reading such reports. Therefore a need for a tool emerges\nthat assists the process of gaining relevant information out of reports/documents more\nquickly. These text documents are often unstructured and of varying length. They are\nwritten in the English language and are available from different sources (such as RSS\nfeeds and text files). The aim of this project is to offer a tool that supports the process of\nanalysing and understanding given texts. This is made possible by using natural language\nprocessing (NLP) and text visualization (TextVis). TextVis is already a well known and\nfrequently used solution. The herein described project uses an NLP pipeline which serves\nas preprocessing for TextVis. To provide quick insight into the data, topic extraction\nmechanisms like Latent Dirichlet Allocation (LDA) or Non-negative Matrix Factorization\n(NMF) are available for the user to be chosen within the aforementioned pipeline. A major\nchallenge for TextVis is the configuration of the NLP pipeline, because there are many\ndifferent ways of doing so and a wide range of parameters to chose from. To overcome this\nissue, this project provides a solution that enables users to easily configure and customize\ntheir own NLP pipeline. It is designed to encourage these users to experiment with\ndifferent sequences of NLP operations and parameter configurations to find a solution\nthat suites them best. In order to keep it easy to use the software, it is implemented\nentirely using web technologies to be accessible in a common web browser. The resulting\nvisualization will emphasize particular parts of the text based on a set of different factors,\nif selected so. These factors can be topics, sentiments and part-of-speech-tagged words.\nThe focus of this work lies on a visual interface that enables and encourages users to\nadjust/optimize the underlying NLP pipeline (by selecting steps and setting parameters)\nand comparing their results. Evaluation with help of user feedback showed that certain\npipeline configurations work better for certain types of texts than others. Using the\nsolution created within this work, users can adapt the tool to their needs and also tweak\nit according to requirements. There is no universal configuration that works for all\ndocuments, however.",
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        "main_image": {
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        "title": "Exploring visual attention and saliency modeling for task-based visual analysis",
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        "abstract": "Memory, visual attention and perception play a critical role in the design of visualizations. The way users observe a visualization is affected by salient stimuli in a scene as well as by domain knowledge, interest, and the task. While recent saliency models manage to predict the users’ visual attention in visualizations during exploratory analysis, there is little evidence how much influence bottom-up saliency has on task-based visual analysis. Therefore, we performed an eye-tracking study with 47 users to determine the users’ path of attention when solving three low-level analytical tasks using 30 different charts from the MASSVIS database [1]. We also compared our task-based eye tracking data to the data from the original memorability experiment by Borkin et al. [2]. We found that solving a task leads to more consistent viewing patterns compared to exploratory visual analysis. However, bottom-up saliency of a visualization has negligible influence on users’ fixations and task efficiency when performing a low-level analytical task. Also, the efficiency of visual search for an extreme target data point is barely influenced by the target’s bottom-up saliency. Therefore, we conclude that bottom-up saliency models tailored towards information visualization are not suitable for predicting visual attention when performing task-based visual analysis. We discuss potential reasons and suggest extensions to visual attention models to better account for task-based visual analysis.",
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        "title": "Reduced-Order Shape Optimization Using Offset Surfaces in Blender",
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        "abstract": "The advance of 3D printers’ capabilities and their sinking costs led to a huge trend of\npersonal and commercial fabrication. But those advances were restricted to the hardware\nside meaning that there was a lack of software to optimize the digital models before printing. This was necessary because physical properties like mass, center of mass or moments of inertia, were neglected in the design of digital 3D models. Those properties play an important role in the behavior of a real-world object. Examples of an objects behavior are the ability to stand in a specific pose, float in the water or stably rotate around a certain axis.\nIn the last few years methods have been presented to optimize digital models by altering\nspecific regions of their volume in order to change their physical properties and therefore\nto prepare them for printing. A recently presented method forms the basis of this thesis.\nDue to its flexibility and performance it is well suited to be integrated into current 3D modeling applications. The algorithm was implemented as a C/C++ library which can be integrated in almost every application. Afterwards this library was integrated into the open source 3D modeling application Blender as a modifier. ",
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