Haichao Miao, Elisa De Llano, Johannes Sorger, Yasaman Ahmadi, Tadija Kekic, Tobias Isenberg, Eduard Gröller, Ivan Barisic, Ivan Viola
Multiscale Visualization and Scale-adaptive Modification of DNA Nanostructures
IEEE Transactions on Visualization and Computer Graphics, 24(1), January 2018. [paper]

Johannes Sorger
Integration Strategies in the Visualization of Multifaceted Spatial Data
Supervisor: Ivan Viola
Duration: 2013 — 2017
[thesis]

Daniel Gehrer, Ivan Viola
Visualization of molecular machinery using agent-based animation
In Proceedings of SCCG 2017. May 2017.
[paper]

David Kouřil, Mathieu Le Muzic, Barbora Kozlikova, Ivan Viola
Maya2cellVIEW: Integrated Tool for Creating Large and Complex Molecular Scenes
Poster shown at Spring Conference on Computer Graphics 2017 (May 2017)

Johannes Sorger, Peter Mindek, Peter Rautek, Eduard Gröller, Graham Johnson, Ivan Viola
Metamorphers: Storytelling Templates For Illustrative Animated Transitions in Molecular Visualization
In Proceedings of the Spring Conference on Computer Graphics 2017, pages 27-36. May 2017.
[paper] [teaser] [video]

Ivan Kolesár, Stefan Bruckner, Ivan Viola, Helwig Hauser
A Fractional Cartesian Composition Model for Semi-Spatial ComparativeVisualization Design
IEEE Transactions on Visualization and Computer Graphics, 23(1), January 2017.

Tobias Klein, Ludovic Autin, Barbora Kozlikova, David Goodsell, Arthur Olson, Eduard Gröller, Ivan Viola
Instant Construction and Visualization of Crowded Biological Environments
IEEE Transactions on Visualization and Computer Graphics, 2018. [paper]

Peter Mindek, David Kouřil, Johannes Sorger, David Toloudis, Blair Lyons, Graham Johnson, Eduard Gröller, Ivan Viola
Visualization Multi-Pipeline for Communicating Biology
IEEE Transactions on Visualization and Computer Graphics, 24(1), 2017. [Paper] [Preview Movie] [Slides]

Viktor Vad, Jan Byska, Adam Jurcik, Ivan Viola, Eduard Gröller, Helwig Hauser, Sergio M. Margues, Jiri Damborsky, Barbora Kozlikova
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics
In Eurographics Workshop on Visual Computing for Biology and Medicine 2017, pages 33-42. 2017.

Barbora Kozlikova, Michael Krone, Martin Falk, Norbert Lindow, Daniel Baum, Ivan Viola, Marc Baaden, Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art Revisited
Computer Graphics Forum, (XX), November 2016.

Johannes Sorger, Peter Mindek, Tobias Klein, Graham Johnson, Ivan Viola
Illustrative Transitions in Molecular Visualization via Forward and Inverse Abstraction Transform
In Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pages 21-30. September 2016.
[paper] [video]

Jan Byska, Mathieu Le Muzic, Eduard Gröller, Ivan Viola, Barbora Kozlikova
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
IEEE Transactions on Visualization and Computer Graphics, 22(1):747-756, January 2016. [Paper]

Michael Krone, Barbora Kozlikova, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, Ivan Viola
Visual Analysis of Biomolecular Cavities: State of the Art
Computer Graphics Forum, 35(3):527-551, 2016. [paper]

Matthias Reisacher, Mathieu Le Muzic, Ivan Viola
CellPathway: A Simulation Tool for Illustrative Visualization of Biochemical Networks
In Proceedings of WSCG. 2016.
[paper]

Viktor Vad, Douglas Cedrim, Wolfgang Busch, Peter Filzmoser, Ivan Viola
Generalized box-plot for root growth ensembles
BMC Bioinformatics, 2016.

Mathieu Le Muzic, Peter Mindek, Johannes Sorger, Ludovic Autin, David Goodsell, Ivan Viola
Visibility Equalizer: Cutaway Visualization of Mesoscopic Biological Models
Computer Graphics Forum, 35(3), 2016. [Paper] [Slides]

Mathieu Le Muzic, Ludovic Autin, Julius Parulek, Ivan Viola
cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets
In Eurographics Workshop on Visual Computing for Biology and Medicine, pages 61-70. September 2015.
[] [paper]

Jan Byska, Adam Jurcik, Eduard Gröller, Ivan Viola, Barbora Kozlikova
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids
Computer Graphics Forum, 3(34):1-10, May 2015. [Paper]

Barbora Kozlikova, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art
In Eurographics Conference on Visualization (EuroVis) - STARs, pages 061-081. May 2015.
[Paper]

Mathieu Le Muzic, Manuela Waldner, Julius Parulek, Ivan Viola
Illustrative Timelapse: A Technique for Illustrative Visualization of Particle Simulations on the Mesoscale Level
In Visualization Symposium (PacificVis), 2015 IEEE Pacific, pages 247-254. April 2015.
[paper] [screenshot]

Manuela Waldner, Mathieu Le Muzic, Matthias Bernhard, Werner Purgathofer, Ivan Viola
Attractive Flicker: Guiding Attention in Dynamic Narrative Visualizations
IEEE Transactions on Visualization and Computer Graphics, 20(12):2456-2465, December 2014. [paper] [Preview video] [Submission video]

Ivan Kolesár, Julius Parulek, Ivan Viola, Stefan Bruckner, Anne-Kristin Stavrum, Helwig Hauser
Interactively illustrating polymerization using three-level model fusion
BMC Bioinformatics 2014, 15(345):1-16, October 2014.

Ivan Kolesár, Julius Parulek, Ivan Viola, Stefan Bruckner, Anne-Kristin Stavrum, Helwig Hauser
Illustrating Polymerization using Three-level Model Fusion
In Proceedings of IEEE BioVis 2014, pages 1-22. July 2014.

Mathieu Le Muzic, Julius Parulek, Anne-Kristin Stavrum, Ivan Viola
Illustrative Visualization of Molecular Reactions using Omniscient Intelligence and Passive Agents
Computer Graphics Forum, 33(3):141-150, June 2014. [paper] [video]

Julius Parulek, Daniel Jönsson, Timo Ropinski, Stefan Bruckner, Anders Ynnerman, Ivan Viola
Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization
Computer Graphics Forum, 33(6):276-287, May 2014.

Julius Parulek, Cagatay Turkay, Nathalie Reuter, Ivan Viola
Visual cavity analysis in molecular simulations
BMC Bioinformatics, 14(Suppl 19:S4 ):1-15, November 2013. [Paper]

Johannes Sorger, Katja Bühler, Florian Schulze, Tianxiao Liu, Barry Dickson
neuroMAP - Interactive Graph-Visualization of the Fruit Fly's Neural Circuit
In Biological Data Visualization (BioVis), 2013 IEEE Symposium on , pages 73-80. October 2013.

Julius Parulek, Timo Ropinski, Ivan Viola
Seamless Visual Abstraction of Molecular Surfaces
In SCCG 2013 - 29th Proceedings Spring conference on Computer Graphics, pages 120-127. May 2013.
[Paper]